plot_distance_heatmap

Takes the output of cell_distances and plot the distances as a heatmap.

plot_distance_heatmap(phenotype_distances_result, metric = "mean")

Arguments

phenotype_distances_result

Dataframe output from `calculate_summary_distances_between_celltypes` or `calculate_minimum_distances_between_celltypes`.

metric

Metric to be plotted. One of "mean", "std.dev", "median", "min" or "max".

Value

A plot is returned

Examples

dists <- calculate_pairwise_distances_between_celltypes(SPIAT::defined_image, 
cell_types_of_interest = c("Tumour","Immune1"), feature_colname = "Cell.Type")
summary_distances <- calculate_summary_distances_between_celltypes(dists)
plot_distance_heatmap(summary_distances)