R/calculate_pairwise_distances_between_celltypes.R
calculate_pairwise_distances_between_celltypes.Rd
Returns the pairwise distances between cells of different types. If none of the cell types are found, it will print an error message and return a vector of NAs.
calculate_pairwise_distances_between_celltypes(
spe_object,
cell_types_of_interest = NULL,
feature_colname
)
SpatialExperiment object in the form of the output of
format_image_to_spe
.
String Vector containing cell types to be considered, if NULL, all cell type combinations will be calculated.
String of the name the feature column with the cell types of interest to be considered.
A data.frame is returned.
calculate_pairwise_distances_between_celltypes(SPIAT::defined_image,
cell_types_of_interest = c("Tumour","Immune1"),
feature_colname = "Cell.Type")
#> Cell1 Cell2 Distance Type1 Type2 Pair
#> 2 Cell_25 Cell_15 119.39827 Immune1 Immune1 Immune1/Immune1
#> 3 Cell_30 Cell_15 61.77859 Immune1 Immune1 Immune1/Immune1
#> 4 Cell_48 Cell_15 279.84944 Immune1 Immune1 Immune1/Immune1
#> 5 Cell_56 Cell_15 237.67335 Immune1 Immune1 Immune1/Immune1
#> 6 Cell_61 Cell_15 335.22489 Immune1 Immune1 Immune1/Immune1
#> 7 Cell_71 Cell_15 342.60619 Immune1 Immune1 Immune1/Immune1
#> 8 Cell_83 Cell_15 301.84395 Immune1 Immune1 Immune1/Immune1
#> 9 Cell_86 Cell_15 225.22881 Immune1 Immune1 Immune1/Immune1
#> 10 Cell_94 Cell_15 542.32855 Immune1 Immune1 Immune1/Immune1
#> 11 Cell_99 Cell_15 405.84255 Immune1 Immune1 Immune1/Immune1
#> 12 Cell_105 Cell_15 514.01023 Immune1 Immune1 Immune1/Immune1
#> 13 Cell_107 Cell_15 435.39893 Immune1 Immune1 Immune1/Immune1
#> 14 Cell_154 Cell_15 706.99725 Immune1 Immune1 Immune1/Immune1
#> 15 Cell_155 Cell_15 608.28345 Immune1 Immune1 Immune1/Immune1
#> 16 Cell_162 Cell_15 591.03913 Immune1 Immune1 Immune1/Immune1
#> 17 Cell_181 Cell_15 911.64023 Immune1 Immune1 Immune1/Immune1
#> 18 Cell_195 Cell_15 866.76045 Immune1 Immune1 Immune1/Immune1
#> 19 Cell_196 Cell_15 961.34659 Immune1 Immune1 Immune1/Immune1
#> 20 Cell_205 Cell_15 1047.02696 Immune1 Immune1 Immune1/Immune1
#> 21 Cell_211 Cell_15 1034.07460 Immune1 Immune1 Immune1/Immune1
#> 22 Cell_227 Cell_15 1102.73314 Immune1 Immune1 Immune1/Immune1
#> 23 Cell_242 Cell_15 984.53051 Immune1 Immune1 Immune1/Immune1
#> 24 Cell_244 Cell_15 1026.58735 Immune1 Immune1 Immune1/Immune1
#> 25 Cell_251 Cell_15 1250.27644 Immune1 Immune1 Immune1/Immune1
#> 26 Cell_252 Cell_15 1230.93722 Immune1 Immune1 Immune1/Immune1
#> 27 Cell_262 Cell_15 1343.33578 Immune1 Immune1 Immune1/Immune1
#> 28 Cell_271 Cell_15 1394.29934 Immune1 Immune1 Immune1/Immune1
#> 29 Cell_284 Cell_15 1291.47258 Immune1 Immune1 Immune1/Immune1
#> 30 Cell_309 Cell_15 1484.68671 Immune1 Immune1 Immune1/Immune1
#> 31 Cell_310 Cell_15 1461.57290 Immune1 Immune1 Immune1/Immune1
#> 32 Cell_321 Cell_15 1475.60228 Immune1 Immune1 Immune1/Immune1
#> 33 Cell_324 Cell_15 1550.22397 Immune1 Immune1 Immune1/Immune1
#> 34 Cell_326 Cell_15 1533.05486 Immune1 Immune1 Immune1/Immune1
#> 35 Cell_331 Cell_15 1552.32839 Immune1 Immune1 Immune1/Immune1
#> 36 Cell_333 Cell_15 1441.70710 Immune1 Immune1 Immune1/Immune1
#> 37 Cell_336 Cell_15 1457.42721 Immune1 Immune1 Immune1/Immune1
#> 38 Cell_352 Cell_15 1597.35446 Immune1 Immune1 Immune1/Immune1
#> 39 Cell_366 Cell_15 1645.71833 Immune1 Immune1 Immune1/Immune1
#> 40 Cell_410 Cell_15 1970.70975 Immune1 Immune1 Immune1/Immune1
#> 41 Cell_432 Cell_15 1886.88350 Immune1 Immune1 Immune1/Immune1
#> 42 Cell_464 Cell_15 106.16733 Immune1 Immune1 Immune1/Immune1
#> 43 Cell_465 Cell_15 191.51914 Immune1 Immune1 Immune1/Immune1
#> 44 Cell_466 Cell_15 196.15280 Immune1 Immune1 Immune1/Immune1
#> 45 Cell_469 Cell_15 186.99581 Immune1 Immune1 Immune1/Immune1
#> 46 Cell_486 Cell_15 386.12403 Immune1 Immune1 Immune1/Immune1
#> 47 Cell_488 Cell_15 217.28974 Immune1 Immune1 Immune1/Immune1
#> 48 Cell_490 Cell_15 350.11600 Immune1 Immune1 Immune1/Immune1
#> 49 Cell_492 Cell_15 362.94678 Immune1 Immune1 Immune1/Immune1
#> 50 Cell_497 Cell_15 380.74370 Immune1 Immune1 Immune1/Immune1
#> 51 Cell_498 Cell_15 310.68063 Immune1 Immune1 Immune1/Immune1
#> 52 Cell_505 Cell_15 206.15130 Immune1 Immune1 Immune1/Immune1
#> 53 Cell_533 Cell_15 347.57692 Immune1 Immune1 Immune1/Immune1
#> 54 Cell_563 Cell_15 470.33985 Immune1 Immune1 Immune1/Immune1
#> 55 Cell_568 Cell_15 481.44486 Immune1 Immune1 Immune1/Immune1
#> 56 Cell_574 Cell_15 474.50684 Immune1 Immune1 Immune1/Immune1
#> 57 Cell_613 Cell_15 679.92114 Immune1 Immune1 Immune1/Immune1
#> 58 Cell_622 Cell_15 787.19320 Immune1 Immune1 Immune1/Immune1
#> 59 Cell_626 Cell_15 663.90680 Immune1 Immune1 Immune1/Immune1
#> 60 Cell_645 Cell_15 965.06351 Immune1 Immune1 Immune1/Immune1
#> 61 Cell_649 Cell_15 968.63505 Immune1 Immune1 Immune1/Immune1
#> 62 Cell_654 Cell_15 912.29932 Immune1 Immune1 Immune1/Immune1
#> 63 Cell_663 Cell_15 942.61238 Immune1 Immune1 Immune1/Immune1
#> 64 Cell_669 Cell_15 991.26742 Immune1 Immune1 Immune1/Immune1
#> 65 Cell_703 Cell_15 1038.46534 Immune1 Immune1 Immune1/Immune1
#> 66 Cell_706 Cell_15 1023.87276 Immune1 Immune1 Immune1/Immune1
#> 67 Cell_710 Cell_15 1023.22733 Immune1 Immune1 Immune1/Immune1
#> 68 Cell_742 Cell_15 1053.17969 Immune1 Immune1 Immune1/Immune1
#> 69 Cell_748 Cell_15 1274.64357 Immune1 Immune1 Immune1/Immune1
#> 70 Cell_817 Cell_15 1589.61641 Immune1 Immune1 Immune1/Immune1
#> 71 Cell_835 Cell_15 1500.45282 Immune1 Immune1 Immune1/Immune1
#> 72 Cell_847 Cell_15 1681.61651 Immune1 Immune1 Immune1/Immune1
#> 73 Cell_891 Cell_15 1737.45361 Immune1 Immune1 Immune1/Immune1
#> 74 Cell_896 Cell_15 1720.25833 Immune1 Immune1 Immune1/Immune1
#> 75 Cell_907 Cell_15 1811.04895 Immune1 Immune1 Immune1/Immune1
#> 76 Cell_910 Cell_15 1887.10633 Immune1 Immune1 Immune1/Immune1
#> 77 Cell_926 Cell_15 1986.01555 Immune1 Immune1 Immune1/Immune1
#> 78 Cell_952 Cell_15 397.79650 Immune1 Immune1 Immune1/Immune1
#> 79 Cell_959 Cell_15 504.82750 Immune1 Immune1 Immune1/Immune1
#> 80 Cell_1004 Cell_15 436.51426 Immune1 Immune1 Immune1/Immune1
#> 81 Cell_1006 Cell_15 357.79435 Immune1 Immune1 Immune1/Immune1
#> 82 Cell_1015 Cell_15 452.95784 Immune1 Immune1 Immune1/Immune1
#> 83 Cell_1018 Cell_15 503.36362 Immune1 Immune1 Immune1/Immune1
#> 84 Cell_1021 Cell_15 527.32357 Immune1 Immune1 Immune1/Immune1
#> 85 Cell_1027 Cell_15 425.10964 Immune1 Immune1 Immune1/Immune1
#> 86 Cell_1036 Cell_15 467.69452 Immune1 Immune1 Immune1/Immune1
#> 87 Cell_1067 Cell_15 628.78794 Immune1 Immune1 Immune1/Immune1
#> 88 Cell_1104 Cell_15 716.37391 Immune1 Immune1 Immune1/Immune1
#> 89 Cell_1108 Cell_15 712.62464 Immune1 Immune1 Immune1/Immune1
#> 90 Cell_1114 Cell_15 783.66738 Immune1 Immune1 Immune1/Immune1
#> 91 Cell_1136 Cell_15 1011.86062 Immune1 Immune1 Immune1/Immune1
#> 92 Cell_1389 Cell_15 1935.00093 Immune1 Immune1 Immune1/Immune1
#> 93 Cell_1393 Cell_15 1939.40134 Immune1 Immune1 Immune1/Immune1
#> 94 Cell_1396 Cell_15 1967.53615 Immune1 Immune1 Immune1/Immune1
#> 95 Cell_1402 Cell_15 1895.27981 Immune1 Immune1 Immune1/Immune1
#> 96 Cell_1405 Cell_15 1888.26272 Immune1 Immune1 Immune1/Immune1
#> 97 Cell_1412 Cell_15 1948.32303 Immune1 Immune1 Immune1/Immune1
#> 98 Cell_1426 Cell_15 1876.60613 Immune1 Immune1 Immune1/Immune1
#> 99 Cell_1431 Cell_15 1900.83173 Immune1 Immune1 Immune1/Immune1
#> 100 Cell_1455 Cell_15 552.73287 Immune1 Immune1 Immune1/Immune1
#> 101 Cell_1463 Cell_15 673.67090 Immune1 Immune1 Immune1/Immune1
#> 102 Cell_1465 Cell_15 583.78598 Immune1 Immune1 Immune1/Immune1
#> 103 Cell_1467 Cell_15 528.64096 Immune1 Immune1 Immune1/Immune1
#> 104 Cell_1475 Cell_15 516.95562 Immune1 Immune1 Immune1/Immune1
#> 105 Cell_1479 Cell_15 539.53320 Immune1 Immune1 Immune1/Immune1
#> 106 Cell_1490 Cell_15 634.10341 Immune1 Immune1 Immune1/Immune1
#> 107 Cell_1515 Cell_15 522.80830 Immune1 Immune1 Immune1/Immune1
#> 108 Cell_1524 Cell_15 709.77551 Immune1 Immune1 Immune1/Immune1
#> 109 Cell_1688 Cell_15 1146.20574 Immune1 Immune1 Immune1/Immune1
#> 110 Cell_1721 Cell_15 1290.72533 Immune1 Immune1 Immune1/Immune1
#> 111 Cell_1722 Cell_15 1146.21800 Immune1 Immune1 Immune1/Immune1
#> 112 Cell_1888 Cell_15 1879.38698 Immune1 Immune1 Immune1/Immune1
#> 113 Cell_1899 Cell_15 1941.01824 Immune1 Immune1 Immune1/Immune1
#> 114 Cell_1908 Cell_15 1883.91277 Immune1 Immune1 Immune1/Immune1
#> 115 Cell_1912 Cell_15 1932.52669 Immune1 Immune1 Immune1/Immune1
#> 116 Cell_1929 Cell_15 1931.73884 Immune1 Immune1 Immune1/Immune1
#> 117 Cell_1937 Cell_15 2033.07503 Immune1 Immune1 Immune1/Immune1
#> 118 Cell_1939 Cell_15 2039.46600 Immune1 Immune1 Immune1/Immune1
#> 119 Cell_1947 Cell_15 892.23909 Immune1 Immune1 Immune1/Immune1
#> 120 Cell_1950 Cell_15 796.89490 Immune1 Immune1 Immune1/Immune1
#> 121 Cell_1956 Cell_15 815.34079 Immune1 Immune1 Immune1/Immune1
#> 122 Cell_1974 Cell_15 792.70396 Immune1 Immune1 Immune1/Immune1
#> 123 Cell_1987 Cell_15 811.99958 Immune1 Immune1 Immune1/Immune1
#> 124 Cell_2006 Cell_15 727.99883 Immune1 Immune1 Immune1/Immune1
#> 125 Cell_2039 Cell_15 779.15222 Immune1 Immune1 Immune1/Immune1
#> 126 Cell_2208 Cell_15 1397.86105 Immune1 Immune1 Immune1/Immune1
#> 127 Cell_2220 Cell_15 1386.99855 Immune1 Immune1 Immune1/Immune1
#> 128 Cell_2243 Cell_15 1446.50924 Immune1 Immune1 Immune1/Immune1
#> 129 Cell_2256 Cell_15 1530.24110 Immune1 Immune1 Immune1/Immune1
#> 130 Cell_2259 Cell_15 1612.99515 Immune1 Immune1 Immune1/Immune1
#> 131 Cell_2262 Cell_15 1498.37579 Immune1 Immune1 Immune1/Immune1
#> 132 Cell_2273 Cell_15 1486.91357 Immune1 Immune1 Immune1/Immune1
#> 133 Cell_2278 Cell_15 1430.61063 Immune1 Immune1 Immune1/Immune1
#> 134 Cell_2297 Cell_15 1703.35470 Immune1 Immune1 Immune1/Immune1
#> 135 Cell_2330 Cell_15 1704.61831 Immune1 Immune1 Immune1/Immune1
#> 136 Cell_2345 Cell_15 1764.13668 Immune1 Immune1 Immune1/Immune1
#> 137 Cell_2352 Cell_15 1779.75394 Immune1 Immune1 Immune1/Immune1
#> 138 Cell_2354 Cell_15 1759.20561 Immune1 Immune1 Immune1/Immune1
#> 139 Cell_2355 Cell_15 1872.52528 Immune1 Immune1 Immune1/Immune1
#> 140 Cell_2396 Cell_15 1964.10273 Immune1 Immune1 Immune1/Immune1
#> 141 Cell_2399 Cell_15 1976.22403 Immune1 Immune1 Immune1/Immune1
#> 142 Cell_2413 Cell_15 2081.99058 Immune1 Immune1 Immune1/Immune1
#> 143 Cell_2420 Cell_15 2020.83573 Immune1 Immune1 Immune1/Immune1
#> 144 Cell_2426 Cell_15 2075.31779 Immune1 Immune1 Immune1/Immune1
#> 145 Cell_2434 Cell_15 2005.29147 Immune1 Immune1 Immune1/Immune1
#> 146 Cell_2462 Cell_15 1037.89033 Immune1 Immune1 Immune1/Immune1
#> 147 Cell_2463 Cell_15 918.77474 Immune1 Immune1 Immune1/Immune1
#> 148 Cell_2480 Cell_15 1074.40346 Immune1 Immune1 Immune1/Immune1
#> 149 Cell_2499 Cell_15 987.44730 Immune1 Immune1 Immune1/Immune1
#> 150 Cell_2500 Cell_15 971.97735 Immune1 Immune1 Immune1/Immune1
#> 151 Cell_2504 Cell_15 996.65277 Immune1 Immune1 Immune1/Immune1
#> 152 Cell_2508 Cell_15 1005.45611 Immune1 Immune1 Immune1/Immune1
#> 153 Cell_2536 Cell_15 1022.66563 Immune1 Immune1 Immune1/Immune1
#> 154 Cell_2567 Cell_15 1085.27977 Immune1 Immune1 Immune1/Immune1
#> 155 Cell_2569 Cell_15 1071.89290 Immune1 Immune1 Immune1/Immune1
#> 156 Cell_2582 Cell_15 1208.07205 Immune1 Immune1 Immune1/Immune1
#> 157 Cell_2778 Cell_15 1521.20994 Immune1 Immune1 Immune1/Immune1
#> 158 Cell_2779 Cell_15 1639.34594 Immune1 Immune1 Immune1/Immune1
#> 159 Cell_2793 Cell_15 1638.74555 Immune1 Immune1 Immune1/Immune1
#> 160 Cell_2825 Cell_15 1576.37749 Immune1 Immune1 Immune1/Immune1
#> 161 Cell_2830 Cell_15 1852.05740 Immune1 Immune1 Immune1/Immune1
#> 162 Cell_2834 Cell_15 1816.49965 Immune1 Immune1 Immune1/Immune1
#> 163 Cell_2835 Cell_15 1777.81124 Immune1 Immune1 Immune1/Immune1
#> 164 Cell_2858 Cell_15 1793.72599 Immune1 Immune1 Immune1/Immune1
#> 165 Cell_2882 Cell_15 2052.25334 Immune1 Immune1 Immune1/Immune1
#> 166 Cell_2895 Cell_15 1946.54621 Immune1 Immune1 Immune1/Immune1
#> 167 Cell_2916 Cell_15 1948.64476 Immune1 Immune1 Immune1/Immune1
#> 168 Cell_2925 Cell_15 2030.21670 Immune1 Immune1 Immune1/Immune1
#> 169 Cell_2936 Cell_15 2153.62013 Immune1 Immune1 Immune1/Immune1
#> 170 Cell_2965 Cell_15 2217.46012 Immune1 Immune1 Immune1/Immune1
#> 171 Cell_2986 Cell_15 1251.07717 Immune1 Immune1 Immune1/Immune1
#> 172 Cell_2998 Cell_15 1189.55029 Immune1 Immune1 Immune1/Immune1
#> 173 Cell_2999 Cell_15 1291.20140 Immune1 Immune1 Immune1/Immune1
#> 174 Cell_3011 Cell_15 1181.03533 Immune1 Immune1 Immune1/Immune1
#> 175 Cell_3017 Cell_15 1219.83878 Immune1 Immune1 Immune1/Immune1
#> 176 Cell_3022 Cell_15 1228.29514 Immune1 Immune1 Immune1/Immune1
#> 177 Cell_3035 Cell_15 1254.01220 Immune1 Immune1 Immune1/Immune1
#> 178 Cell_3051 Cell_15 1194.40956 Immune1 Immune1 Immune1/Immune1
#> 179 Cell_3053 Cell_15 1259.40230 Immune1 Immune1 Immune1/Immune1
#> 180 Cell_3057 Cell_15 1137.55045 Immune1 Immune1 Immune1/Immune1
#> 181 Cell_3086 Cell_15 1285.68956 Immune1 Immune1 Immune1/Immune1
#> 182 Cell_3098 Cell_15 1223.29567 Immune1 Immune1 Immune1/Immune1
#> 183 Cell_3115 Cell_15 1215.17120 Immune1 Immune1 Immune1/Immune1
#> 184 Cell_3122 Cell_15 1274.72351 Immune1 Immune1 Immune1/Immune1
#> 185 Cell_3133 Cell_15 1370.67796 Immune1 Immune1 Immune1/Immune1
#> 186 Cell_3306 Cell_15 1780.60681 Immune1 Immune1 Immune1/Immune1
#> 187 Cell_3335 Cell_15 1992.54465 Immune1 Immune1 Immune1/Immune1
#> 188 Cell_3336 Cell_15 1916.10567 Immune1 Immune1 Immune1/Immune1
#> 189 Cell_3349 Cell_15 1985.01477 Immune1 Immune1 Immune1/Immune1
#> 190 Cell_3353 Cell_15 1896.64365 Immune1 Immune1 Immune1/Immune1
#> 191 Cell_3376 Cell_15 2051.79296 Immune1 Immune1 Immune1/Immune1
#> 192 Cell_3379 Cell_15 2137.19287 Immune1 Immune1 Immune1/Immune1
#> 193 Cell_3381 Cell_15 2021.25806 Immune1 Immune1 Immune1/Immune1
#> 194 Cell_3385 Cell_15 2064.70304 Immune1 Immune1 Immune1/Immune1
#> 195 Cell_3399 Cell_15 2023.59299 Immune1 Immune1 Immune1/Immune1
#> 196 Cell_3421 Cell_15 2077.69702 Immune1 Immune1 Immune1/Immune1
#> 197 Cell_3425 Cell_15 2003.41968 Immune1 Immune1 Immune1/Immune1
#> 198 Cell_3431 Cell_15 2163.50939 Immune1 Immune1 Immune1/Immune1
#> 199 Cell_3471 Cell_15 2136.17199 Immune1 Immune1 Immune1/Immune1
#> 200 Cell_3482 Cell_15 2206.56098 Immune1 Immune1 Immune1/Immune1
#> 201 Cell_3494 Cell_15 1478.43441 Immune1 Immune1 Immune1/Immune1
#> 202 Cell_3496 Cell_15 1497.24636 Immune1 Immune1 Immune1/Immune1
#> 203 Cell_3511 Cell_15 1377.05245 Immune1 Immune1 Immune1/Immune1
#> 204 Cell_3538 Cell_15 1476.70492 Immune1 Immune1 Immune1/Immune1
#> 205 Cell_3539 Cell_15 1402.16665 Immune1 Immune1 Immune1/Immune1
#> 206 Cell_3548 Cell_15 1527.13158 Immune1 Immune1 Immune1/Immune1
#> 207 Cell_3549 Cell_15 1478.87546 Immune1 Immune1 Immune1/Immune1
#> 208 Cell_3552 Cell_15 1451.87065 Immune1 Immune1 Immune1/Immune1
#> 209 Cell_3553 Cell_15 1406.70661 Immune1 Immune1 Immune1/Immune1
#> 210 Cell_3564 Cell_15 1353.03657 Immune1 Immune1 Immune1/Immune1
#> 211 Cell_3572 Cell_15 1385.11606 Immune1 Immune1 Immune1/Immune1
#> 212 Cell_3656 Cell_15 1567.01825 Immune1 Immune1 Immune1/Immune1
#> 213 Cell_3658 Cell_15 1531.75939 Immune1 Immune1 Immune1/Immune1
#> 214 Cell_3661 Cell_15 1583.25450 Immune1 Immune1 Immune1/Immune1
#> 215 Cell_3675 Cell_15 1531.71176 Immune1 Immune1 Immune1/Immune1
#> 216 Cell_3698 Cell_15 1646.97589 Immune1 Immune1 Immune1/Immune1
#> 217 Cell_3701 Cell_15 1670.12070 Immune1 Immune1 Immune1/Immune1
#> 218 Cell_3706 Cell_15 1574.21185 Immune1 Immune1 Immune1/Immune1
#> 219 Cell_3713 Cell_15 1590.85245 Immune1 Immune1 Immune1/Immune1
#> 220 Cell_3721 Cell_15 1537.34877 Immune1 Immune1 Immune1/Immune1
#> 221 Cell_3864 Cell_15 2053.79851 Immune1 Immune1 Immune1/Immune1
#> 222 Cell_3882 Cell_15 2047.01429 Immune1 Immune1 Immune1/Immune1
#> 223 Cell_3886 Cell_15 1981.11065 Immune1 Immune1 Immune1/Immune1
#> 224 Cell_3888 Cell_15 2072.26180 Immune1 Immune1 Immune1/Immune1
#> 225 Cell_3905 Cell_15 2088.93542 Immune1 Immune1 Immune1/Immune1
#> 226 Cell_3906 Cell_15 2085.28265 Immune1 Immune1 Immune1/Immune1
#> 227 Cell_3911 Cell_15 2239.53936 Immune1 Immune1 Immune1/Immune1
#> 228 Cell_3912 Cell_15 2223.38917 Immune1 Immune1 Immune1/Immune1
#> 229 Cell_3919 Cell_15 2206.70140 Immune1 Immune1 Immune1/Immune1
#> 230 Cell_3930 Cell_15 2297.03786 Immune1 Immune1 Immune1/Immune1
#> 231 Cell_3942 Cell_15 2201.06633 Immune1 Immune1 Immune1/Immune1
#> 232 Cell_3944 Cell_15 2214.02518 Immune1 Immune1 Immune1/Immune1
#> 233 Cell_3993 Cell_15 2330.17150 Immune1 Immune1 Immune1/Immune1
#> 234 Cell_3996 Cell_15 2351.44299 Immune1 Immune1 Immune1/Immune1
#> 235 Cell_4003 Cell_15 1687.94859 Immune1 Immune1 Immune1/Immune1
#> 236 Cell_4005 Cell_15 1677.62154 Immune1 Immune1 Immune1/Immune1
#> 237 Cell_4022 Cell_15 1537.23092 Immune1 Immune1 Immune1/Immune1
#> 238 Cell_4026 Cell_15 1686.00666 Immune1 Immune1 Immune1/Immune1
#> 239 Cell_4027 Cell_15 1515.68654 Immune1 Immune1 Immune1/Immune1
#> 240 Cell_4030 Cell_15 1592.13804 Immune1 Immune1 Immune1/Immune1
#> 241 Cell_4051 Cell_15 1529.31722 Immune1 Immune1 Immune1/Immune1
#> 242 Cell_4062 Cell_15 1634.91926 Immune1 Immune1 Immune1/Immune1
#> 243 Cell_4068 Cell_15 1549.50088 Immune1 Immune1 Immune1/Immune1
#> 244 Cell_4076 Cell_15 1716.53888 Immune1 Immune1 Immune1/Immune1
#> 245 Cell_4084 Cell_15 1635.95359 Immune1 Immune1 Immune1/Immune1
#> 246 Cell_4105 Cell_15 1704.79760 Immune1 Immune1 Immune1/Immune1
#> 247 Cell_4107 Cell_15 1647.96090 Immune1 Immune1 Immune1/Immune1
#> 248 Cell_4115 Cell_15 1709.33194 Immune1 Immune1 Immune1/Immune1
#> 249 Cell_4126 Cell_15 1745.43320 Immune1 Immune1 Immune1/Immune1
#> 250 Cell_4137 Cell_15 1698.37118 Immune1 Immune1 Immune1/Immune1
#> 251 Cell_4145 Cell_15 1792.04892 Immune1 Immune1 Immune1/Immune1
#> 252 Cell_4166 Cell_15 1723.31497 Immune1 Immune1 Immune1/Immune1
#> 253 Cell_4179 Cell_15 1764.37387 Immune1 Immune1 Immune1/Immune1
#> 254 Cell_4188 Cell_15 1721.39000 Immune1 Immune1 Immune1/Immune1
#> 255 Cell_4195 Cell_15 1764.25472 Immune1 Immune1 Immune1/Immune1
#> 256 Cell_4209 Cell_15 1926.34203 Immune1 Immune1 Immune1/Immune1
#> 257 Cell_4220 Cell_15 1917.10359 Immune1 Immune1 Immune1/Immune1
#> 258 Cell_4226 Cell_15 1898.70424 Immune1 Immune1 Immune1/Immune1
#> 259 Cell_4227 Cell_15 1891.92325 Immune1 Immune1 Immune1/Immune1
#> 260 Cell_4231 Cell_15 1874.48612 Immune1 Immune1 Immune1/Immune1
#> 261 Cell_4239 Cell_15 1867.20414 Immune1 Immune1 Immune1/Immune1
#> 262 Cell_4246 Cell_15 1859.05801 Immune1 Immune1 Immune1/Immune1
#> 263 Cell_4306 Cell_15 2041.35909 Immune1 Immune1 Immune1/Immune1
#> 264 Cell_4307 Cell_15 2024.48273 Immune1 Immune1 Immune1/Immune1
#> 265 Cell_4308 Cell_15 2110.30733 Immune1 Immune1 Immune1/Immune1
#> 266 Cell_4311 Cell_15 2027.12755 Immune1 Immune1 Immune1/Immune1
#> 267 Cell_4324 Cell_15 2108.13796 Immune1 Immune1 Immune1/Immune1
#> 268 Cell_4344 Cell_15 2014.42132 Immune1 Immune1 Immune1/Immune1
#> 269 Cell_4354 Cell_15 2283.38679 Immune1 Immune1 Immune1/Immune1
#> 270 Cell_4355 Cell_15 2135.02778 Immune1 Immune1 Immune1/Immune1
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#> 1882 Cell_3379 Cell_61 1851.58183 Immune1 Immune1 Immune1/Immune1
#> 1883 Cell_3381 Cell_61 1730.28208 Immune1 Immune1 Immune1/Immune1
#> 1884 Cell_3385 Cell_61 1770.77122 Immune1 Immune1 Immune1/Immune1
#> 1885 Cell_3399 Cell_61 1726.04562 Immune1 Immune1 Immune1/Immune1
#> 1886 Cell_3421 Cell_61 1794.02081 Immune1 Immune1 Immune1/Immune1
#> 1887 Cell_3425 Cell_61 1713.31988 Immune1 Immune1 Immune1/Immune1
#> 1888 Cell_3431 Cell_61 1871.38613 Immune1 Immune1 Immune1/Immune1
#> 1889 Cell_3471 Cell_61 1834.25189 Immune1 Immune1 Immune1/Immune1
#> 1890 Cell_3482 Cell_61 1911.09205 Immune1 Immune1 Immune1/Immune1
#> 1891 Cell_3494 Cell_61 1454.67998 Immune1 Immune1 Immune1/Immune1
#> 1892 Cell_3496 Cell_61 1468.86914 Immune1 Immune1 Immune1/Immune1
#> 1893 Cell_3511 Cell_61 1371.91389 Immune1 Immune1 Immune1/Immune1
#> 1894 Cell_3538 Cell_61 1411.11928 Immune1 Immune1 Immune1/Immune1
#> 1895 Cell_3539 Cell_61 1336.80913 Immune1 Immune1 Immune1/Immune1
#> 1896 Cell_3548 Cell_61 1443.48282 Immune1 Immune1 Immune1/Immune1
#> 1897 Cell_3549 Cell_61 1394.68813 Immune1 Immune1 Immune1/Immune1
#> 1898 Cell_3552 Cell_61 1396.34038 Immune1 Immune1 Immune1/Immune1
#> 1899 Cell_3553 Cell_61 1317.85604 Immune1 Immune1 Immune1/Immune1
#> 1900 Cell_3564 Cell_61 1278.11967 Immune1 Immune1 Immune1/Immune1
#> 1901 Cell_3572 Cell_61 1308.54387 Immune1 Immune1 Immune1/Immune1
#> 1902 Cell_3656 Cell_61 1417.56582 Immune1 Immune1 Immune1/Immune1
#> 1903 Cell_3658 Cell_61 1350.44633 Immune1 Immune1 Immune1/Immune1
#> 1904 Cell_3661 Cell_61 1448.68128 Immune1 Immune1 Immune1/Immune1
#> 1905 Cell_3675 Cell_61 1361.76791 Immune1 Immune1 Immune1/Immune1
#> 1906 Cell_3698 Cell_61 1469.47449 Immune1 Immune1 Immune1/Immune1
#> 1907 Cell_3701 Cell_61 1495.89134 Immune1 Immune1 Immune1/Immune1
#> 1908 Cell_3706 Cell_61 1378.16075 Immune1 Immune1 Immune1/Immune1
#> 1909 Cell_3713 Cell_61 1405.95490 Immune1 Immune1 Immune1/Immune1
#> 1910 Cell_3721 Cell_61 1354.11662 Immune1 Immune1 Immune1/Immune1
#> 1911 Cell_3864 Cell_61 1783.10954 Immune1 Immune1 Immune1/Immune1
#> 1912 Cell_3882 Cell_61 1796.35447 Immune1 Immune1 Immune1/Immune1
#> 1913 Cell_3886 Cell_61 1724.92880 Immune1 Immune1 Immune1/Immune1
#> 1914 Cell_3888 Cell_61 1808.63998 Immune1 Immune1 Immune1/Immune1
#> 1915 Cell_3905 Cell_61 1831.21146 Immune1 Immune1 Immune1/Immune1
#> 1916 Cell_3906 Cell_61 1818.14514 Immune1 Immune1 Immune1/Immune1
#> 1917 Cell_3911 Cell_61 1961.46639 Immune1 Immune1 Immune1/Immune1
#> 1918 Cell_3912 Cell_61 1945.37292 Immune1 Immune1 Immune1/Immune1
#> 1919 Cell_3919 Cell_61 1920.48201 Immune1 Immune1 Immune1/Immune1
#> 1920 Cell_3930 Cell_61 2020.05252 Immune1 Immune1 Immune1/Immune1
#> 1921 Cell_3942 Cell_61 1930.10471 Immune1 Immune1 Immune1/Immune1
#> 1922 Cell_3944 Cell_61 1936.54076 Immune1 Immune1 Immune1/Immune1
#> 1923 Cell_3993 Cell_61 2040.98890 Immune1 Immune1 Immune1/Immune1
#> 1924 Cell_3996 Cell_61 2066.28302 Immune1 Immune1 Immune1/Immune1
#> 1925 Cell_4003 Cell_61 1646.17062 Immune1 Immune1 Immune1/Immune1
#> 1926 Cell_4005 Cell_61 1657.73614 Immune1 Immune1 Immune1/Immune1
#> 1927 Cell_4022 Cell_61 1518.83980 Immune1 Immune1 Immune1/Immune1
#> 1928 Cell_4026 Cell_61 1647.35297 Immune1 Immune1 Immune1/Immune1
#> 1929 Cell_4027 Cell_61 1482.64160 Immune1 Immune1 Immune1/Immune1
#> 1930 Cell_4030 Cell_61 1565.87713 Immune1 Immune1 Immune1/Immune1
#> 1931 Cell_4051 Cell_61 1492.83774 Immune1 Immune1 Immune1/Immune1
#> 1932 Cell_4062 Cell_61 1566.83092 Immune1 Immune1 Immune1/Immune1
#> 1933 Cell_4068 Cell_61 1501.52451 Immune1 Immune1 Immune1/Immune1
#> 1934 Cell_4076 Cell_61 1639.08071 Immune1 Immune1 Immune1/Immune1
#> 1935 Cell_4084 Cell_61 1563.38004 Immune1 Immune1 Immune1/Immune1
#> 1936 Cell_4105 Cell_61 1589.27133 Immune1 Immune1 Immune1/Immune1
#> 1937 Cell_4107 Cell_61 1542.16561 Immune1 Immune1 Immune1/Immune1
#> 1938 Cell_4115 Cell_61 1589.34057 Immune1 Immune1 Immune1/Immune1
#> 1939 Cell_4126 Cell_61 1624.36123 Immune1 Immune1 Immune1/Immune1
#> 1940 Cell_4137 Cell_61 1585.48463 Immune1 Immune1 Immune1/Immune1
#> 1941 Cell_4145 Cell_61 1633.42721 Immune1 Immune1 Immune1/Immune1
#> 1942 Cell_4166 Cell_61 1564.27126 Immune1 Immune1 Immune1/Immune1
#> 1943 Cell_4179 Cell_61 1625.22078 Immune1 Immune1 Immune1/Immune1
#> 1944 Cell_4188 Cell_61 1594.12819 Immune1 Immune1 Immune1/Immune1
#> 1945 Cell_4195 Cell_61 1595.03500 Immune1 Immune1 Immune1/Immune1
#> 1946 Cell_4209 Cell_61 1737.35109 Immune1 Immune1 Immune1/Immune1
#> 1947 Cell_4220 Cell_61 1737.75355 Immune1 Immune1 Immune1/Immune1
#> 1948 Cell_4226 Cell_61 1731.73846 Immune1 Immune1 Immune1/Immune1
#> 1949 Cell_4227 Cell_61 1713.66367 Immune1 Immune1 Immune1/Immune1
#> 1950 Cell_4231 Cell_61 1703.85073 Immune1 Immune1 Immune1/Immune1
#> 1951 Cell_4239 Cell_61 1698.40905 Immune1 Immune1 Immune1/Immune1
#> 1952 Cell_4246 Cell_61 1685.91046 Immune1 Immune1 Immune1/Immune1
#> 1953 Cell_4306 Cell_61 1809.66880 Immune1 Immune1 Immune1/Immune1
#> 1954 Cell_4307 Cell_61 1793.88440 Immune1 Immune1 Immune1/Immune1
#> 1955 Cell_4308 Cell_61 1887.77205 Immune1 Immune1 Immune1/Immune1
#> 1956 Cell_4311 Cell_61 1805.90517 Immune1 Immune1 Immune1/Immune1
#> 1957 Cell_4324 Cell_61 1883.43134 Immune1 Immune1 Immune1/Immune1
#> 1958 Cell_4344 Cell_61 1772.92040 Immune1 Immune1 Immune1/Immune1
#> 1959 Cell_4354 Cell_61 2034.20105 Immune1 Immune1 Immune1/Immune1
#> 1960 Cell_4355 Cell_61 1884.94932 Immune1 Immune1 Immune1/Immune1
#> 1961 Cell_4362 Cell_61 1948.05406 Immune1 Immune1 Immune1/Immune1
#> 1962 Cell_4371 Cell_61 2018.47374 Immune1 Immune1 Immune1/Immune1
#> 1963 Cell_4378 Cell_61 1956.74987 Immune1 Immune1 Immune1/Immune1
#> 1964 Cell_4426 Cell_61 2101.56346 Immune1 Immune1 Immune1/Immune1
#> 1965 Cell_4431 Cell_61 2003.95134 Immune1 Immune1 Immune1/Immune1
#> 1966 Cell_4452 Cell_61 2045.83409 Immune1 Immune1 Immune1/Immune1
#> 1967 Cell_4462 Cell_61 2306.80086 Immune1 Immune1 Immune1/Immune1
#> 1968 Cell_4464 Cell_61 2250.54498 Immune1 Immune1 Immune1/Immune1
#> 1969 Cell_4478 Cell_61 2167.45436 Immune1 Immune1 Immune1/Immune1
#> 1970 Cell_4484 Cell_61 2202.27897 Immune1 Immune1 Immune1/Immune1
#> 1971 Cell_4487 Cell_61 2208.77684 Immune1 Immune1 Immune1/Immune1
#> 1972 Cell_4500 Cell_61 2203.25357 Immune1 Immune1 Immune1/Immune1
#> 1973 Cell_4505 Cell_61 1695.61508 Immune1 Immune1 Immune1/Immune1
#> 1974 Cell_4513 Cell_61 1719.04349 Immune1 Immune1 Immune1/Immune1
#> 1975 Cell_4547 Cell_61 1842.41736 Immune1 Immune1 Immune1/Immune1
#> 1976 Cell_4563 Cell_61 1768.65596 Immune1 Immune1 Immune1/Immune1
#> 1977 Cell_4569 Cell_61 1762.36716 Immune1 Immune1 Immune1/Immune1
#> 1978 Cell_4570 Cell_61 1699.67773 Immune1 Immune1 Immune1/Immune1
#> 1979 Cell_4580 Cell_61 1715.19197 Immune1 Immune1 Immune1/Immune1
#> 1980 Cell_4581 Cell_61 1796.88968 Immune1 Immune1 Immune1/Immune1
#> 1981 Cell_4586 Cell_61 1702.22462 Immune1 Immune1 Immune1/Immune1
#> 1982 Cell_4603 Cell_61 1780.62619 Immune1 Immune1 Immune1/Immune1
#> 1983 Cell_4607 Cell_61 1700.00176 Immune1 Immune1 Immune1/Immune1
#> 1984 Cell_4635 Cell_61 1805.95704 Immune1 Immune1 Immune1/Immune1
#> 1985 Cell_4639 Cell_61 1724.56611 Immune1 Immune1 Immune1/Immune1
#> 1986 Cell_4651 Cell_61 1783.28420 Immune1 Immune1 Immune1/Immune1
#> 1987 Cell_4652 Cell_61 1768.22502 Immune1 Immune1 Immune1/Immune1
#> 1988 Cell_4654 Cell_61 1812.32222 Immune1 Immune1 Immune1/Immune1
#> 1989 Cell_4655 Cell_61 1747.24144 Immune1 Immune1 Immune1/Immune1
#> 1990 Cell_4664 Cell_61 1860.17450 Immune1 Immune1 Immune1/Immune1
#> 1991 Cell_4670 Cell_61 1707.38599 Immune1 Immune1 Immune1/Immune1
#> 1992 Cell_4683 Cell_61 1800.94628 Immune1 Immune1 Immune1/Immune1
#> 1993 Cell_4685 Cell_61 1827.94403 Immune1 Immune1 Immune1/Immune1
#> 1994 Cell_4693 Cell_61 1913.24321 Immune1 Immune1 Immune1/Immune1
#> 1995 Cell_4696 Cell_61 1914.40447 Immune1 Immune1 Immune1/Immune1
#> 1996 Cell_4710 Cell_61 1767.08363 Immune1 Immune1 Immune1/Immune1
#> 1997 Cell_4714 Cell_61 1814.43446 Immune1 Immune1 Immune1/Immune1
#> 1998 Cell_4717 Cell_61 1789.24999 Immune1 Immune1 Immune1/Immune1
#> 1999 Cell_4718 Cell_61 1762.20118 Immune1 Immune1 Immune1/Immune1
#> 2000 Cell_4719 Cell_61 1783.69273 Immune1 Immune1 Immune1/Immune1
#> 2001 Cell_4720 Cell_61 1848.78229 Immune1 Immune1 Immune1/Immune1
#> 2002 Cell_4728 Cell_61 1911.84382 Immune1 Immune1 Immune1/Immune1
#> 2003 Cell_4754 Cell_61 1877.21732 Immune1 Immune1 Immune1/Immune1
#> 2004 Cell_4769 Cell_61 1964.06494 Immune1 Immune1 Immune1/Immune1
#> 2005 Cell_4772 Cell_61 1950.10238 Immune1 Immune1 Immune1/Immune1
#> 2006 Cell_4775 Cell_61 1931.85566 Immune1 Immune1 Immune1/Immune1
#> 2007 Cell_4800 Cell_61 1938.08681 Immune1 Immune1 Immune1/Immune1
#> 2008 Cell_4801 Cell_61 1884.82677 Immune1 Immune1 Immune1/Immune1
#> 2009 Cell_4802 Cell_61 2062.48239 Immune1 Immune1 Immune1/Immune1
#> 2010 Cell_4807 Cell_61 2106.73997 Immune1 Immune1 Immune1/Immune1
#> 2011 Cell_4833 Cell_61 2162.73164 Immune1 Immune1 Immune1/Immune1
#> 2012 Cell_4837 Cell_61 2134.61136 Immune1 Immune1 Immune1/Immune1
#> 2013 Cell_4841 Cell_61 2091.34970 Immune1 Immune1 Immune1/Immune1
#> 2014 Cell_4844 Cell_61 2130.87473 Immune1 Immune1 Immune1/Immune1
#> 2015 Cell_4846 Cell_61 2187.57063 Immune1 Immune1 Immune1/Immune1
#> 2016 Cell_4849 Cell_61 2172.51010 Immune1 Immune1 Immune1/Immune1
#> 2017 Cell_4868 Cell_61 2264.98192 Immune1 Immune1 Immune1/Immune1
#> 2018 Cell_4873 Cell_61 2195.78265 Immune1 Immune1 Immune1/Immune1
#> 2019 Cell_4883 Cell_61 2141.13657 Immune1 Immune1 Immune1/Immune1
#> 2020 Cell_4884 Cell_61 2273.54991 Immune1 Immune1 Immune1/Immune1
#> 2021 Cell_4887 Cell_61 2289.44506 Immune1 Immune1 Immune1/Immune1
#> 2022 Cell_4892 Cell_61 2229.43285 Immune1 Immune1 Immune1/Immune1
#> 2023 Cell_4907 Cell_61 2175.86929 Immune1 Immune1 Immune1/Immune1
#> 2024 Cell_4917 Cell_61 2352.99843 Immune1 Immune1 Immune1/Immune1
#> 2025 Cell_4922 Cell_61 2451.53486 Immune1 Immune1 Immune1/Immune1
#> 2026 Cell_4925 Cell_61 2416.39791 Immune1 Immune1 Immune1/Immune1
#> 2027 Cell_4937 Cell_61 2319.29845 Immune1 Immune1 Immune1/Immune1
#> 2028 Cell_4951 Cell_61 2262.73113 Immune1 Immune1 Immune1/Immune1
#> 2029 Cell_15 Cell_71 342.60619 Immune1 Immune1 Immune1/Immune1
#> 2030 Cell_25 Cell_71 225.89213 Immune1 Immune1 Immune1/Immune1
#> 2031 Cell_30 Cell_71 326.17534 Immune1 Immune1 Immune1/Immune1
#> 2032 Cell_48 Cell_71 110.62386 Immune1 Immune1 Immune1/Immune1
#> 2033 Cell_56 Cell_71 180.39526 Immune1 Immune1 Immune1/Immune1
#> 2034 Cell_61 Cell_71 22.17110 Immune1 Immune1 Immune1/Immune1
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#> [ reached 'max' / getOption("max.print") -- omitted 1320826 rows ]