plot_cells.Rd
Produces a scatter plot of the cells in the tissue. Cells are
coloured categorically by Cell.Type
column. Cell categories not specified
will be coloured "lightgrey" and labled "Unspecified".
plot_cells(
spe_object,
categories_of_interest = NULL,
colour_vector = NULL,
feature_colname = "Cell.Type"
)
SpatialExperiment object or a data.frame that has cell locations and cell type info.
String Vector of cell categories to be coloured.
String Vector specifying the colours of each cell type.
String specifying the column the cell categories belong to.
A plot is returned