Format SPE object as a ppp object (`spatstat` package)

Source: R/format_spe_to_ppp.R

Formats an spe object into a ppp object which has the x,y coordinates, phenotypes as markers window specifies the range of x and y coordinates

format_spe_to_ppp(
  spe_object,
  window_pol = FALSE,
  feature_colname = "Phenotype"
)

Arguments

spe_object

SpatialExperiment object in the form of the output of format_image_to_spe.

window_pol

Optional Boolean Specifying if the window is polygon.

feature_colname

String specifying the feature column of interest.

Value

A ppp object is returned (defined in `spatstat` package)

Examples

ppp_object<-format_spe_to_ppp(SPIAT::defined_image, 
feature_colname = "Cell.Type")